Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 IGHV3-42-201ENST00000520410 361 ntBASIC12.67□□□□□ -0.38
PRKDCP78527 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 AC004233.3-201ENST00000607794 1269 ntBASIC12.67□□□□□ -0.38
PRKDCP78527 SPDYE12P-201ENST00000618416 771 ntBASIC12.67□□□□□ -0.38
PRKDCP78527 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
PRKDCP78527 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC12.66□□□□□ -0.38
PRKDCP78527 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.66□□□□□ -0.38
PRKDCP78527 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 SNX1-214ENST00000625244 324 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
PRKDCP78527 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 AC097637.2-201ENST00000624096 1997 ntBASIC12.66□□□□□ -0.38
PRKDCP78527 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC12.66□□□□□ -0.38
PRKDCP78527 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.66□□□□□ -0.38
PRKDCP78527 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.66□□□□□ -0.38
PRKDCP78527 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.66□□□□□ -0.38
PRKDCP78527 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 NME6-203ENST00000415644 849 ntTSL 2 BASIC12.66□□□□□ -0.38
PRKDCP78527 CXCL1P1-201ENST00000502804 216 ntBASIC12.66□□□□□ -0.38
PRKDCP78527 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.66□□□□□ -0.38
PRKDCP78527 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.66□□□□□ -0.38
PRKDCP78527 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.66□□□□□ -0.38
PRKDCP78527 AC008494.3-201ENST00000606615 944 ntBASIC12.66□□□□□ -0.38
PRKDCP78527 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
PRKDCP78527 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
PRKDCP78527 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 FAM86C2P-203ENST00000528684 1004 ntBASIC12.65□□□□□ -0.38
PRKDCP78527 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.65□□□□□ -0.38
PRKDCP78527 MIR6080-201ENST00000617359 66 ntBASIC12.65□□□□□ -0.38
PRKDCP78527 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
PRKDCP78527 AC008735.3-201ENST00000596646 500 ntBASIC12.65□□□□□ -0.38
PRKDCP78527 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.65□□□□□ -0.38
PRKDCP78527 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
PRKDCP78527 LINC01006-201ENST00000333319 2292 ntBASIC12.65□□□□□ -0.38
PRKDCP78527 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
PRKDCP78527 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 AC022210.1-201ENST00000449856 793 ntBASIC12.65□□□□□ -0.38
PRKDCP78527 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.65□□□□□ -0.38
PRKDCP78527 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
PRKDCP78527 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC12.65□□□□□ -0.38
PRKDCP78527 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
PRKDCP78527 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
PRKDCP78527 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 AL109936.8-201ENST00000641772 604 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
PRKDCP78527 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 RHOQP1-201ENST00000555758 579 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 ORC6-206ENST00000568364 888 ntTSL 5 BASIC12.64□□□□□ -0.39
PRKDCP78527 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 ELK2AP-201ENST00000392510 1007 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 HIST1H2BPS3-201ENST00000419683 341 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.64□□□□□ -0.39
PRKDCP78527 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms