Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
RIPK4P57078 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RIPK4P57078 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 SOD2-201ENST00000337404 991 ntTSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.18■■□□□ 1.3
RIPK4P57078 RBM17P3-201ENST00000417687 1192 ntBASIC23.18■■□□□ 1.3
RIPK4P57078 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC23.18■■□□□ 1.3
RIPK4P57078 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 FGFR3P6-201ENST00000457012 610 ntBASIC23.18■■□□□ 1.3
RIPK4P57078 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC23.18■■□□□ 1.3
RIPK4P57078 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.18■■□□□ 1.3
RIPK4P57078 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.18■■□□□ 1.3
RIPK4P57078 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RIPK4P57078 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC23.17■■□□□ 1.3
RIPK4P57078 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.17■■□□□ 1.3
RIPK4P57078 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
RIPK4P57078 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23.17■■□□□ 1.3
RIPK4P57078 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC23.17■■□□□ 1.3
RIPK4P57078 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC23.17■■□□□ 1.3
RIPK4P57078 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.17■■□□□ 1.3
RIPK4P57078 AC109462.3-201ENST00000573934 613 ntBASIC23.17■■□□□ 1.3
RIPK4P57078 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
RIPK4P57078 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RIPK4P57078 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RIPK4P57078 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RIPK4P57078 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 AL160237.2-201ENST00000556165 472 ntBASIC23.16■■□□□ 1.3
RIPK4P57078 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.16■■□□□ 1.3
RIPK4P57078 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RIPK4P57078 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 TP73-AS1-207ENST00000624167 988 ntBASIC23.16■■□□□ 1.3
RIPK4P57078 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 AL353593.2-201ENST00000602529 1483 ntBASIC23.16■■□□□ 1.3
RIPK4P57078 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RIPK4P57078 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RIPK4P57078 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
RIPK4P57078 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.16■■□□□ 1.3
RIPK4P57078 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC23.16■■□□□ 1.3
RIPK4P57078 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
RIPK4P57078 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC23.15■■□□□ 1.3
RIPK4P57078 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC23.15■■□□□ 1.3
RIPK4P57078 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
RIPK4P57078 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 AC026396.1-201ENST00000419388 421 ntBASIC23.15■■□□□ 1.3
RIPK4P57078 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
RIPK4P57078 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
RIPK4P57078 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
RIPK4P57078 PAN3-AS1-201ENST00000563843 1351 ntBASIC23.14■■□□□ 1.3
RIPK4P57078 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
RIPK4P57078 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC23.14■■□□□ 1.3
RIPK4P57078 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
RIPK4P57078 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.3
RIPK4P57078 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC23.14■■□□□ 1.3
RIPK4P57078 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.14■■□□□ 1.29
RIPK4P57078 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.14■■□□□ 1.29
RIPK4P57078 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RIPK4P57078 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.14■■□□□ 1.29
RIPK4P57078 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.14■■□□□ 1.29
RIPK4P57078 AC009078.2-202ENST00000463353 338 ntBASIC23.14■■□□□ 1.29
RIPK4P57078 AP002469.2-201ENST00000531724 424 ntBASIC23.14■■□□□ 1.29
RIPK4P57078 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
RIPK4P57078 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RIPK4P57078 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.14■■□□□ 1.29
RIPK4P57078 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RIPK4P57078 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms