Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.17■□□□□ 0.34
FOXA1P55317 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
FOXA1P55317 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.17■□□□□ 0.34
FOXA1P55317 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
FOXA1P55317 LYSMD4-203ENST00000378904 2122 ntBASIC17.17■□□□□ 0.34
FOXA1P55317 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA1P55317 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.16■□□□□ 0.34
FOXA1P55317 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA1P55317 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA1P55317 TERF1P1-201ENST00000311003 1181 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
FOXA1P55317 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.16■□□□□ 0.34
FOXA1P55317 YBX1P2-201ENST00000489612 999 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.16■□□□□ 0.34
FOXA1P55317 AC012306.2-201ENST00000609350 630 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 AC133561.5-201ENST00000635547 218 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 AL031432.5-201ENST00000641059 760 ntBASIC17.16■□□□□ 0.34
FOXA1P55317 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
FOXA1P55317 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
FOXA1P55317 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
FOXA1P55317 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
FOXA1P55317 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 AC073508.3-201ENST00000619697 1419 ntBASIC17.15■□□□□ 0.34
FOXA1P55317 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
FOXA1P55317 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 IGHGP-201ENST00000390555 1178 ntBASIC17.15■□□□□ 0.34
FOXA1P55317 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 AC113347.1-201ENST00000413321 391 ntBASIC17.15■□□□□ 0.34
FOXA1P55317 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.15■□□□□ 0.34
FOXA1P55317 AC117947.1-201ENST00000427448 529 ntBASIC17.15■□□□□ 0.34
FOXA1P55317 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.15■□□□□ 0.34
FOXA1P55317 KRT18P38-201ENST00000449496 1282 ntBASIC17.15■□□□□ 0.34
FOXA1P55317 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.15■□□□□ 0.34
FOXA1P55317 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.15■□□□□ 0.34
FOXA1P55317 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
FOXA1P55317 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.15■□□□□ 0.34
FOXA1P55317 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.15■□□□□ 0.34
FOXA1P55317 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
FOXA1P55317 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
FOXA1P55317 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
FOXA1P55317 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.14■□□□□ 0.34
FOXA1P55317 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
FOXA1P55317 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms