Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 RNPS1P1-201ENST00000507437 918 ntBASIC18.75■□□□□ 0.59
LHX1P48742 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.75■□□□□ 0.59
LHX1P48742 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.75■□□□□ 0.59
LHX1P48742 SART3-203ENST00000546611 1184 ntBASIC18.75■□□□□ 0.59
LHX1P48742 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.75■□□□□ 0.59
LHX1P48742 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.75■□□□□ 0.59
LHX1P48742 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.75■□□□□ 0.59
LHX1P48742 AL773604.1-201ENST00000617417 272 ntBASIC18.75■□□□□ 0.59
LHX1P48742 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.75■□□□□ 0.59
LHX1P48742 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LHX1P48742 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LHX1P48742 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.75■□□□□ 0.59
LHX1P48742 SIGLEC16-201ENST00000599858 1437 ntBASIC18.74■□□□□ 0.59
LHX1P48742 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LHX1P48742 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.74■□□□□ 0.59
LHX1P48742 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.74■□□□□ 0.59
LHX1P48742 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.74■□□□□ 0.59
LHX1P48742 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 AC005104.2-201ENST00000427818 678 ntBASIC18.74■□□□□ 0.59
LHX1P48742 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.74■□□□□ 0.59
LHX1P48742 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.74■□□□□ 0.59
LHX1P48742 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.74■□□□□ 0.59
LHX1P48742 NKAPP1-205ENST00000585790 367 ntBASIC18.74■□□□□ 0.59
LHX1P48742 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.74■□□□□ 0.59
LHX1P48742 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LHX1P48742 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 MYCLP1-201ENST00000372451 1075 ntBASIC18.73■□□□□ 0.59
LHX1P48742 SPDYE21P-201ENST00000413323 827 ntBASIC18.73■□□□□ 0.59
LHX1P48742 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.73■□□□□ 0.59
LHX1P48742 AC018712.1-201ENST00000455767 687 ntBASIC18.73■□□□□ 0.59
LHX1P48742 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 AC021087.4-201ENST00000563761 564 ntBASIC18.73■□□□□ 0.59
LHX1P48742 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.73■□□□□ 0.59
LHX1P48742 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
LHX1P48742 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.73■□□□□ 0.59
LHX1P48742 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LHX1P48742 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LHX1P48742 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
LHX1P48742 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LHX1P48742 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LHX1P48742 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms