Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TK1-204ENST00000590430 683 ntTSL 3 BASIC23.17■■□□□ 1.3
COL18A1P39060 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL18A1P39060 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL18A1P39060 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC23.16■■□□□ 1.3
COL18A1P39060 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC23.16■■□□□ 1.3
COL18A1P39060 BSG-215ENST00000618006 1329 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL18A1P39060 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL18A1P39060 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC23.16■■□□□ 1.3
COL18A1P39060 PTMS-202ENST00000389462 773 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC23.16■■□□□ 1.3
COL18A1P39060 AC140658.5-201ENST00000438532 169 ntBASIC23.16■■□□□ 1.3
COL18A1P39060 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC23.16■■□□□ 1.3
COL18A1P39060 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL18A1P39060 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL18A1P39060 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC23.16■■□□□ 1.3
COL18A1P39060 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL18A1P39060 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC23.15■■□□□ 1.3
COL18A1P39060 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 CD99-202ENST00000381180 530 ntTSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 NABP1-203ENST00000409510 843 ntTSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 DAD1-205ENST00000543337 501 ntTSL 3 BASIC23.15■■□□□ 1.3
COL18A1P39060 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 AC116407.2-201ENST00000613639 860 ntBASIC23.15■■□□□ 1.3
COL18A1P39060 REXO1L3P-201ENST00000622202 1288 ntBASIC23.15■■□□□ 1.3
COL18A1P39060 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL18A1P39060 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL18A1P39060 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC23.15■■□□□ 1.3
COL18A1P39060 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL18A1P39060 GPS2P2-201ENST00000430745 888 ntBASIC23.14■■□□□ 1.3
COL18A1P39060 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC23.14■■□□□ 1.3
COL18A1P39060 AC112191.1-201ENST00000523689 701 ntBASIC23.14■■□□□ 1.3
COL18A1P39060 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL18A1P39060 PRR29-209ENST00000582540 967 ntTSL 2 BASIC23.14■■□□□ 1.3
COL18A1P39060 INO80C-206ENST00000586489 594 ntTSL 3 BASIC23.14■■□□□ 1.3
COL18A1P39060 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC23.14■■□□□ 1.3
COL18A1P39060 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC23.14■■□□□ 1.3
COL18A1P39060 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL18A1P39060 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL18A1P39060 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL18A1P39060 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL18A1P39060 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.14■■□□□ 1.29
COL18A1P39060 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL18A1P39060 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
COL18A1P39060 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
COL18A1P39060 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
COL18A1P39060 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
COL18A1P39060 MIR661-201ENST00000384842 89 ntBASIC23.14■■□□□ 1.29
COL18A1P39060 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC23.14■■□□□ 1.29
COL18A1P39060 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL18A1P39060 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC23.14■■□□□ 1.29
COL18A1P39060 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC23.14■■□□□ 1.29
COL18A1P39060 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC23.14■■□□□ 1.29
COL18A1P39060 AC004449.1-201ENST00000564240 433 ntBASIC23.14■■□□□ 1.29
COL18A1P39060 AC051619.7-201ENST00000568314 623 ntBASIC23.14■■□□□ 1.29
COL18A1P39060 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC23.14■■□□□ 1.29
COL18A1P39060 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL18A1P39060 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC23.14■■□□□ 1.29
COL18A1P39060 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 REXO1L11P-201ENST00000620964 1927 ntBASIC23.13■■□□□ 1.29
COL18A1P39060 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC23.13■■□□□ 1.29
COL18A1P39060 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
COL18A1P39060 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.13■■□□□ 1.29
COL18A1P39060 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 PI4KAP1-204ENST00000612579 1703 ntBASIC23.13■■□□□ 1.29
COL18A1P39060 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL18A1P39060 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.13■■□□□ 1.29
COL18A1P39060 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.12■■□□□ 1.29
COL18A1P39060 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL18A1P39060 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms