Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 AL662844.1-201ENST00000546340 181 ntBASIC16.26■□□□□ 0.19
MSX1P28360 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.26■□□□□ 0.19
MSX1P28360 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 AC023511.2-201ENST00000618803 211 ntBASIC16.26■□□□□ 0.19
MSX1P28360 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.26■□□□□ 0.19
MSX1P28360 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSX1P28360 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
MSX1P28360 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.26■□□□□ 0.19
MSX1P28360 AC233702.3-201ENST00000578656 1387 ntBASIC16.26■□□□□ 0.19
MSX1P28360 KRT8P47-201ENST00000604727 1398 ntBASIC16.26■□□□□ 0.19
MSX1P28360 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.25■□□□□ 0.19
MSX1P28360 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 SLC25A6P4-201ENST00000586535 553 ntBASIC16.25■□□□□ 0.19
MSX1P28360 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 AC138894.3-201ENST00000603787 634 ntBASIC16.25■□□□□ 0.19
MSX1P28360 GPALPP1-207ENST00000611650 899 ntBASIC16.25■□□□□ 0.19
MSX1P28360 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.25■□□□□ 0.19
MSX1P28360 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
MSX1P28360 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
MSX1P28360 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.25■□□□□ 0.19
MSX1P28360 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
MSX1P28360 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.24■□□□□ 0.19
MSX1P28360 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 AL121912.1-201ENST00000603683 238 ntBASIC16.24■□□□□ 0.19
MSX1P28360 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
MSX1P28360 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.24■□□□□ 0.19
MSX1P28360 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MSX1P28360 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX1P28360 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms