Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
USF1P22415 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
USF1P22415 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
USF1P22415 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
USF1P22415 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 SDHAP2-201ENST00000455183 2001 ntBASIC15.04■□□□□ -0
USF1P22415 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.04■□□□□ -0
USF1P22415 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.04■□□□□ -0
USF1P22415 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.04■□□□□ -0
USF1P22415 AC018712.1-201ENST00000455767 687 ntBASIC15.04■□□□□ -0
USF1P22415 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 AC139887.3-201ENST00000568585 713 ntBASIC15.04■□□□□ -0
USF1P22415 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.04■□□□□ -0
USF1P22415 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.04■□□□□ -0
USF1P22415 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.04■□□□□ -0
USF1P22415 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
USF1P22415 AL024508.2-201ENST00000607749 1894 ntBASIC15.03■□□□□ -0
USF1P22415 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.03■□□□□ -0
USF1P22415 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.03■□□□□ -0
USF1P22415 SNCG-201ENST00000348795 684 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.03■□□□□ -0
USF1P22415 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.03■□□□□ -0
USF1P22415 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.03■□□□□ -0
USF1P22415 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.03■□□□□ -0
USF1P22415 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
USF1P22415 FGFR3P6-201ENST00000457012 610 ntBASIC15.03■□□□□ -0
USF1P22415 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.03■□□□□ -0
USF1P22415 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.03■□□□□ -0
USF1P22415 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.03■□□□□ -0
USF1P22415 AC106730.1-201ENST00000566722 1090 ntBASIC15.03■□□□□ -0
USF1P22415 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.03■□□□□ -0
USF1P22415 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.03■□□□□ -0
USF1P22415 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 BICD1-207ENST00000551848 1962 ntBASIC15.03■□□□□ -0
USF1P22415 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC15.03■□□□□ -0
USF1P22415 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
USF1P22415 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.03■□□□□ -0
USF1P22415 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
USF1P22415 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.03■□□□□ -0
USF1P22415 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.02■□□□□ -0
USF1P22415 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.02■□□□□ -0
USF1P22415 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 AC099343.3-201ENST00000605834 2503 ntBASIC15.02■□□□□ -0
USF1P22415 AL390961.4-201ENST00000623958 2535 ntBASIC15.02■□□□□ -0
USF1P22415 ZNF259P1-201ENST00000407656 1365 ntBASIC15.02■□□□□ -0
USF1P22415 AC243591.1-201ENST00000452967 1364 ntBASIC15.02■□□□□ -0
USF1P22415 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
USF1P22415 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
USF1P22415 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.02■□□□□ -0
USF1P22415 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.02■□□□□ -0
USF1P22415 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms