Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 BCAR1-209ENST00000546196 1340 ntBASIC16.87■□□□□ 0.29
COL5A1P20908 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
COL5A1P20908 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 AC023141.5-201ENST00000458585 616 ntBASIC16.87■□□□□ 0.29
COL5A1P20908 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.87■□□□□ 0.29
COL5A1P20908 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.87■□□□□ 0.29
COL5A1P20908 AC106028.4-201ENST00000614509 607 ntBASIC16.87■□□□□ 0.29
COL5A1P20908 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.87■□□□□ 0.29
COL5A1P20908 AL513210.1-201ENST00000629608 234 ntBASIC16.87■□□□□ 0.29
COL5A1P20908 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.87■□□□□ 0.29
COL5A1P20908 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL5A1P20908 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL5A1P20908 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.87■□□□□ 0.29
COL5A1P20908 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.87■□□□□ 0.29
COL5A1P20908 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL5A1P20908 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.87■□□□□ 0.29
COL5A1P20908 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
COL5A1P20908 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 AC023141.13-201ENST00000604991 943 ntBASIC16.86■□□□□ 0.29
COL5A1P20908 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 AC093512.1-201ENST00000617969 520 ntBASIC16.86■□□□□ 0.29
COL5A1P20908 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.86■□□□□ 0.29
COL5A1P20908 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.86■□□□□ 0.29
COL5A1P20908 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.86■□□□□ 0.29
COL5A1P20908 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.86■□□□□ 0.29
COL5A1P20908 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.86■□□□□ 0.29
COL5A1P20908 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL5A1P20908 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL5A1P20908 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 AC092364.2-202ENST00000597012 1073 ntBASIC16.85■□□□□ 0.29
COL5A1P20908 AC022145.2-201ENST00000598203 171 ntBASIC16.85■□□□□ 0.29
COL5A1P20908 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
COL5A1P20908 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.85■□□□□ 0.29
COL5A1P20908 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.85■□□□□ 0.29
COL5A1P20908 AL590787.1-201ENST00000568856 1315 ntBASIC16.85■□□□□ 0.29
COL5A1P20908 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.85■□□□□ 0.29
COL5A1P20908 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL5A1P20908 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.85■□□□□ 0.29
COL5A1P20908 AC009113.1-201ENST00000570267 2443 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms