Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SDC1P18827 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.89■□□□□ 0.3
SDC1P18827 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SDC1P18827 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.89■□□□□ 0.3
SDC1P18827 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC1P18827 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC1P18827 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
SDC1P18827 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC1P18827 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SDC1P18827 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 AC005104.2-201ENST00000427818 678 ntBASIC16.89■□□□□ 0.29
SDC1P18827 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.89■□□□□ 0.29
SDC1P18827 AC068472.1-201ENST00000474589 881 ntBASIC16.89■□□□□ 0.29
SDC1P18827 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.89■□□□□ 0.29
SDC1P18827 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.89■□□□□ 0.29
SDC1P18827 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
SDC1P18827 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC1P18827 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.89■□□□□ 0.29
SDC1P18827 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SDC1P18827 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.89■□□□□ 0.29
SDC1P18827 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SDC1P18827 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.88■□□□□ 0.29
SDC1P18827 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.88■□□□□ 0.29
SDC1P18827 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 AK4P3-201ENST00000418260 669 ntBASIC16.88■□□□□ 0.29
SDC1P18827 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.88■□□□□ 0.29
SDC1P18827 AC005332.3-201ENST00000589904 676 ntBASIC16.88■□□□□ 0.29
SDC1P18827 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.88■□□□□ 0.29
SDC1P18827 AL390719.2-201ENST00000606993 987 ntBASIC16.88■□□□□ 0.29
SDC1P18827 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.88■□□□□ 0.29
SDC1P18827 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.88■□□□□ 0.29
SDC1P18827 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.88■□□□□ 0.29
SDC1P18827 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SDC1P18827 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SDC1P18827 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDC1P18827 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC1P18827 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC1P18827 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SDC1P18827 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 LYSMD4-203ENST00000378904 2122 ntBASIC16.87■□□□□ 0.29
SDC1P18827 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
SDC1P18827 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC1P18827 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.87■□□□□ 0.29
SDC1P18827 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SDC1P18827 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 AC211429.1-201ENST00000415277 523 ntBASIC16.87■□□□□ 0.29
SDC1P18827 RNF126P1-202ENST00000569893 925 ntBASIC16.87■□□□□ 0.29
SDC1P18827 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.87■□□□□ 0.29
SDC1P18827 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.87■□□□□ 0.29
SDC1P18827 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SDC1P18827 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms