Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 AC011270.2-201ENST00000624293 2550 ntBASIC17.32■□□□□ 0.36
PCNAP12004 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 AC100803.2-201ENST00000562459 1963 ntBASIC17.31■□□□□ 0.36
PCNAP12004 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.31■□□□□ 0.36
PCNAP12004 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 LINC01311-201ENST00000565162 1445 ntBASIC17.31■□□□□ 0.36
PCNAP12004 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
PCNAP12004 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
PCNAP12004 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.31■□□□□ 0.36
PCNAP12004 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.31■□□□□ 0.36
PCNAP12004 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.31■□□□□ 0.36
PCNAP12004 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.31■□□□□ 0.36
PCNAP12004 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.31■□□□□ 0.36
PCNAP12004 KRT18P21-201ENST00000515767 1272 ntBASIC17.31■□□□□ 0.36
PCNAP12004 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.31■□□□□ 0.36
PCNAP12004 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 AC004263.2-201ENST00000617183 678 ntBASIC17.31■□□□□ 0.36
PCNAP12004 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.31■□□□□ 0.36
PCNAP12004 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 KRT89P-201ENST00000620027 1478 ntBASIC17.31■□□□□ 0.36
PCNAP12004 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCNAP12004 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 AL645608.8-201ENST00000606034 2086 ntBASIC17.3■□□□□ 0.36
PCNAP12004 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.3■□□□□ 0.36
PCNAP12004 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
PCNAP12004 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.3■□□□□ 0.36
PCNAP12004 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.3■□□□□ 0.36
PCNAP12004 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.3■□□□□ 0.36
PCNAP12004 AP003733.1-201ENST00000491725 852 ntBASIC17.3■□□□□ 0.36
PCNAP12004 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
PCNAP12004 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
PCNAP12004 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCNAP12004 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.3■□□□□ 0.36
PCNAP12004 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.29■□□□□ 0.36
PCNAP12004 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.29■□□□□ 0.36
PCNAP12004 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.29■□□□□ 0.36
PCNAP12004 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.29■□□□□ 0.36
PCNAP12004 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCNAP12004 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms