Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 MCCD1P1-208ENST00000445732 328 ntBASIC17.85■□□□□ 0.45
VIMP08670 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 CKBP1-201ENST00000565489 1086 ntBASIC17.85■□□□□ 0.45
VIMP08670 AC008622.2-201ENST00000617006 1229 ntBASIC17.85■□□□□ 0.45
VIMP08670 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.85■□□□□ 0.45
VIMP08670 AL445675.2-201ENST00000620291 557 ntBASIC17.85■□□□□ 0.45
VIMP08670 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
VIMP08670 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.85■□□□□ 0.45
VIMP08670 HYMAI-201ENST00000635591 3347 ntBASIC17.85■□□□□ 0.45
VIMP08670 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.85■□□□□ 0.45
VIMP08670 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VIMP08670 AL603756.1-201ENST00000606511 2163 ntBASIC17.84■□□□□ 0.45
VIMP08670 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.84■□□□□ 0.45
VIMP08670 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VIMP08670 AL023284.2-201ENST00000405850 579 ntBASIC17.84■□□□□ 0.45
VIMP08670 POM121L13P-201ENST00000422362 380 ntBASIC17.84■□□□□ 0.45
VIMP08670 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VIMP08670 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
VIMP08670 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.84■□□□□ 0.45
VIMP08670 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
VIMP08670 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.84■□□□□ 0.45
VIMP08670 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.84■□□□□ 0.45
VIMP08670 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.84■□□□□ 0.45
VIMP08670 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VIMP08670 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
VIMP08670 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
VIMP08670 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VIMP08670 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VIMP08670 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VIMP08670 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.83■□□□□ 0.45
VIMP08670 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
VIMP08670 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.83■□□□□ 0.44
VIMP08670 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.83■□□□□ 0.44
VIMP08670 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 AC004951.3-201ENST00000418645 1148 ntBASIC17.83■□□□□ 0.44
VIMP08670 AC004980.1-204ENST00000429707 299 ntBASIC17.83■□□□□ 0.44
VIMP08670 UNC93B4-201ENST00000505679 747 ntBASIC17.83■□□□□ 0.44
VIMP08670 AC083906.2-201ENST00000511578 360 ntBASIC17.83■□□□□ 0.44
VIMP08670 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC17.83■□□□□ 0.44
VIMP08670 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.83■□□□□ 0.44
VIMP08670 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
VIMP08670 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VIMP08670 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.83■□□□□ 0.44
VIMP08670 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
VIMP08670 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VIMP08670 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
VIMP08670 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms