Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL591424.1-201ENST00000442569 1213 ntBASIC20.84■□□□□ 0.93
HLA-DOAP06340 SIGLEC30P-201ENST00000455569 941 ntBASIC20.84■□□□□ 0.93
HLA-DOAP06340 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AC140113.2-201ENST00000604370 208 ntBASIC20.84■□□□□ 0.93
HLA-DOAP06340 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 FAM197Y3-203ENST00000618346 717 ntBASIC20.84■□□□□ 0.93
HLA-DOAP06340 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HLA-DOAP06340 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HLA-DOAP06340 FLJ13224-201ENST00000313737 1514 ntBASIC20.83■□□□□ 0.93
HLA-DOAP06340 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 AC136632.2-201ENST00000512891 861 ntBASIC20.83■□□□□ 0.93
HLA-DOAP06340 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 AC092865.5-201ENST00000545435 363 ntBASIC20.83■□□□□ 0.93
HLA-DOAP06340 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HLA-DOAP06340 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
HLA-DOAP06340 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
HLA-DOAP06340 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
HLA-DOAP06340 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HLA-DOAP06340 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC20.83■□□□□ 0.92
HLA-DOAP06340 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.83■□□□□ 0.92
HLA-DOAP06340 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
HLA-DOAP06340 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 AC148477.5-201ENST00000625164 1645 ntBASIC20.82■□□□□ 0.92
HLA-DOAP06340 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 STK19B-204ENST00000512515 211 ntBASIC20.82■□□□□ 0.92
HLA-DOAP06340 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DOAP06340 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HLA-DOAP06340 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.81■□□□□ 0.92
HLA-DOAP06340 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.81■□□□□ 0.92
HLA-DOAP06340 NCF1C-201ENST00000438382 1427 ntBASIC20.81■□□□□ 0.92
HLA-DOAP06340 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 AC073621.1-201ENST00000392730 636 ntBASIC20.81■□□□□ 0.92
HLA-DOAP06340 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.81■□□□□ 0.92
HLA-DOAP06340 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.81■□□□□ 0.92
HLA-DOAP06340 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HLA-DOAP06340 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms