Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.8■□□□□ 0.44
GPC4O75487 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.8■□□□□ 0.44
GPC4O75487 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.8■□□□□ 0.44
GPC4O75487 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.8■□□□□ 0.44
GPC4O75487 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.8■□□□□ 0.44
GPC4O75487 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
GPC4O75487 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.8■□□□□ 0.44
GPC4O75487 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.8■□□□□ 0.44
GPC4O75487 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.8■□□□□ 0.44
GPC4O75487 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.8■□□□□ 0.44
GPC4O75487 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
GPC4O75487 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
GPC4O75487 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.8■□□□□ 0.44
GPC4O75487 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
GPC4O75487 NFIC-211ENST00000641145 8399 ntBASIC17.8■□□□□ 0.44
GPC4O75487 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.79■□□□□ 0.44
GPC4O75487 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.79■□□□□ 0.44
GPC4O75487 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
GPC4O75487 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.79■□□□□ 0.44
GPC4O75487 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.79■□□□□ 0.44
GPC4O75487 AL136038.3-201ENST00000561909 1096 ntBASIC17.79■□□□□ 0.44
GPC4O75487 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.79■□□□□ 0.44
GPC4O75487 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
GPC4O75487 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.79■□□□□ 0.44
GPC4O75487 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
GPC4O75487 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
GPC4O75487 AC139713.2-201ENST00000641328 2723 ntBASIC17.79■□□□□ 0.44
GPC4O75487 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
GPC4O75487 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 LINC00167-201ENST00000530583 1419 ntBASIC17.79■□□□□ 0.44
GPC4O75487 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
GPC4O75487 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
GPC4O75487 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
GPC4O75487 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.78■□□□□ 0.44
GPC4O75487 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.78■□□□□ 0.44
GPC4O75487 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 AC132938.6-201ENST00000623828 1655 ntBASIC17.78■□□□□ 0.44
GPC4O75487 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.78■□□□□ 0.44
GPC4O75487 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.78■□□□□ 0.44
GPC4O75487 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.78■□□□□ 0.44
GPC4O75487 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 PRORSD1P-202ENST00000563365 2154 ntBASIC17.78■□□□□ 0.44
GPC4O75487 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.78■□□□□ 0.44
GPC4O75487 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.78■□□□□ 0.44
GPC4O75487 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
GPC4O75487 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms