Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RNF40O75150 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF40O75150 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF40O75150 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF40O75150 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RNF40O75150 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF40O75150 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF40O75150 AL121672.3-201ENST00000608644 468 ntBASIC19.16■□□□□ 0.66
RNF40O75150 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RNF40O75150 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RNF40O75150 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 AC016734.2-201ENST00000624325 1377 ntBASIC19.16■□□□□ 0.66
RNF40O75150 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.16■□□□□ 0.66
RNF40O75150 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF40O75150 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF40O75150 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RNF40O75150 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.15■□□□□ 0.66
RNF40O75150 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF40O75150 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.15■□□□□ 0.66
RNF40O75150 MCCD1P1-208ENST00000445732 328 ntBASIC19.15■□□□□ 0.66
RNF40O75150 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF40O75150 MIR3180-5-201ENST00000583743 153 ntBASIC19.15■□□□□ 0.66
RNF40O75150 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF40O75150 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF40O75150 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF40O75150 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF40O75150 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF40O75150 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF40O75150 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF40O75150 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF40O75150 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
RNF40O75150 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
RNF40O75150 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.14■□□□□ 0.66
RNF40O75150 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF40O75150 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF40O75150 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RNF40O75150 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.14■□□□□ 0.65
RNF40O75150 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RNF40O75150 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RNF40O75150 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF40O75150 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.14■□□□□ 0.65
RNF40O75150 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.14■□□□□ 0.65
RNF40O75150 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF40O75150 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.14■□□□□ 0.65
RNF40O75150 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.14■□□□□ 0.65
RNF40O75150 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF40O75150 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
RNF40O75150 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF40O75150 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RNF40O75150 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms