Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC3O15379 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HDAC3O15379 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.27■□□□□ 0.36
HDAC3O15379 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HDAC3O15379 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.27■□□□□ 0.35
HDAC3O15379 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
HDAC3O15379 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HDAC3O15379 KRT8P47-201ENST00000604727 1398 ntBASIC17.27■□□□□ 0.35
HDAC3O15379 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC3O15379 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HDAC3O15379 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC3O15379 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC3O15379 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC3O15379 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HDAC3O15379 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 KRT18P65-201ENST00000439811 1286 ntBASIC17.26■□□□□ 0.35
HDAC3O15379 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.26■□□□□ 0.35
HDAC3O15379 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC3O15379 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.26■□□□□ 0.35
HDAC3O15379 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC3O15379 C2orf69P3-201ENST00000565542 1120 ntBASIC17.26■□□□□ 0.35
HDAC3O15379 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.26■□□□□ 0.35
HDAC3O15379 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.26■□□□□ 0.35
HDAC3O15379 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HDAC3O15379 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC3O15379 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC3O15379 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC3O15379 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC3O15379 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC3O15379 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 PRORSD1P-201ENST00000295112 541 ntBASIC17.25■□□□□ 0.35
HDAC3O15379 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.25■□□□□ 0.35
HDAC3O15379 AC009947.2-201ENST00000444014 672 ntBASIC17.25■□□□□ 0.35
HDAC3O15379 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.25■□□□□ 0.35
HDAC3O15379 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 AP000525.1-201ENST00000608286 694 ntBASIC17.25■□□□□ 0.35
HDAC3O15379 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
HDAC3O15379 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.25■□□□□ 0.35
HDAC3O15379 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.25■□□□□ 0.35
HDAC3O15379 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC3O15379 AC060834.1-201ENST00000443027 2032 ntBASIC17.25■□□□□ 0.35
HDAC3O15379 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC3O15379 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC3O15379 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 OR6D1P-203ENST00000641209 4860 ntBASIC17.24■□□□□ 0.35
HDAC3O15379 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.24■□□□□ 0.35
HDAC3O15379 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.24■□□□□ 0.35
HDAC3O15379 AL390955.1-201ENST00000428694 934 ntBASIC17.24■□□□□ 0.35
HDAC3O15379 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC3O15379 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms