Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
CHD1O14646 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC28.38■■■□□ 2.13
CHD1O14646 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CHD1O14646 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC28.38■■■□□ 2.13
CHD1O14646 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC28.38■■■□□ 2.13
CHD1O14646 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC28.37■■■□□ 2.13
CHD1O14646 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
CHD1O14646 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
CHD1O14646 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC28.37■■■□□ 2.13
CHD1O14646 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC28.37■■■□□ 2.13
CHD1O14646 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CHD1O14646 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC28.37■■■□□ 2.13
CHD1O14646 USP39-202ENST00000409025 1946 ntTSL 5 BASIC28.36■■■□□ 2.13
CHD1O14646 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
CHD1O14646 UXT-AS1-201ENST00000590504 1525 ntBASIC28.36■■■□□ 2.13
CHD1O14646 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
CHD1O14646 AL512638.1-201ENST00000457493 794 ntBASIC28.36■■■□□ 2.13
CHD1O14646 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC28.36■■■□□ 2.13
CHD1O14646 MIR6799-201ENST00000620297 69 ntBASIC28.36■■■□□ 2.13
CHD1O14646 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC28.36■■■□□ 2.13
CHD1O14646 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CHD1O14646 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC28.35■■■□□ 2.13
CHD1O14646 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC28.35■■■□□ 2.13
CHD1O14646 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 ALG1L8P-201ENST00000533887 760 ntBASIC28.35■■■□□ 2.13
CHD1O14646 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC28.35■■■□□ 2.13
CHD1O14646 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
CHD1O14646 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC28.35■■■□□ 2.13
CHD1O14646 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
CHD1O14646 AC004233.3-201ENST00000607794 1269 ntBASIC28.35■■■□□ 2.13
CHD1O14646 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CHD1O14646 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC28.34■■■□□ 2.13
CHD1O14646 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC28.34■■■□□ 2.13
CHD1O14646 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
CHD1O14646 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
CHD1O14646 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CHD1O14646 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC28.34■■■□□ 2.13
CHD1O14646 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC28.34■■■□□ 2.13
CHD1O14646 CDK4-206ENST00000549606 558 ntTSL 2 BASIC28.34■■■□□ 2.13
CHD1O14646 AC140912.1-201ENST00000577171 1054 ntBASIC28.34■■■□□ 2.13
CHD1O14646 SPDYE12P-201ENST00000618416 771 ntBASIC28.34■■■□□ 2.13
CHD1O14646 AL590560.3-201ENST00000623350 461 ntBASIC28.34■■■□□ 2.13
CHD1O14646 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC28.34■■■□□ 2.13
CHD1O14646 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC28.33■■■□□ 2.13
CHD1O14646 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC28.33■■■□□ 2.13
CHD1O14646 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHD1O14646 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHD1O14646 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHD1O14646 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC28.33■■■□□ 2.13
CHD1O14646 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC28.33■■■□□ 2.13
CHD1O14646 AC073592.8-201ENST00000624126 511 ntBASIC28.33■■■□□ 2.13
CHD1O14646 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CHD1O14646 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC28.33■■■□□ 2.13
CHD1O14646 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC28.33■■■□□ 2.13
CHD1O14646 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC28.33■■■□□ 2.13
CHD1O14646 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC28.33■■■□□ 2.13
CHD1O14646 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
CHD1O14646 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC28.33■■■□□ 2.12
CHD1O14646 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
CHD1O14646 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC28.32■■■□□ 2.12
CHD1O14646 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CHD1O14646 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
CHD1O14646 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC28.32■■■□□ 2.12
CHD1O14646 CD7-202ENST00000578509 925 ntTSL 3 BASIC28.32■■■□□ 2.12
CHD1O14646 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC28.32■■■□□ 2.12
CHD1O14646 GPER1-207ENST00000619052 571 ntTSL 2 BASIC28.32■■■□□ 2.12
CHD1O14646 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CHD1O14646 AC129492.6-201ENST00000611383 1305 ntBASIC28.32■■■□□ 2.12
CHD1O14646 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC28.32■■■□□ 2.12
CHD1O14646 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CHD1O14646 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC28.32■■■□□ 2.12
CHD1O14646 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms