Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 AP001094.4-201ENST00000579008 2176 ntBASIC17.09■□□□□ 0.33
SLC28A1O00337 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.09■□□□□ 0.33
SLC28A1O00337 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.09■□□□□ 0.33
SLC28A1O00337 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
SLC28A1O00337 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SLC28A1O00337 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.09■□□□□ 0.33
SLC28A1O00337 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SLC28A1O00337 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.09■□□□□ 0.33
SLC28A1O00337 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SLC28A1O00337 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SLC28A1O00337 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SLC28A1O00337 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.08■□□□□ 0.33
SLC28A1O00337 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SLC28A1O00337 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
SLC28A1O00337 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.08■□□□□ 0.32
SLC28A1O00337 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SLC28A1O00337 SPDYE15P-201ENST00000424157 909 ntBASIC17.08■□□□□ 0.32
SLC28A1O00337 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SLC28A1O00337 BX664615.1-201ENST00000443558 458 ntBASIC17.08■□□□□ 0.32
SLC28A1O00337 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
SLC28A1O00337 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
SLC28A1O00337 AC011558.1-201ENST00000623459 338 ntBASIC17.08■□□□□ 0.32
SLC28A1O00337 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.08■□□□□ 0.32
SLC28A1O00337 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SLC28A1O00337 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.08■□□□□ 0.32
SLC28A1O00337 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SLC28A1O00337 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.08■□□□□ 0.32
SLC28A1O00337 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SLC28A1O00337 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SLC28A1O00337 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 OR6D1P-203ENST00000641209 4860 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.07■□□□□ 0.32
SLC28A1O00337 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.07■□□□□ 0.32
SLC28A1O00337 AP003733.1-201ENST00000491725 852 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 ZNF444P1-201ENST00000559497 298 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.07■□□□□ 0.32
SLC28A1O00337 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 AC005363.2-201ENST00000618631 242 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.07■□□□□ 0.32
SLC28A1O00337 AC080080.1-201ENST00000625121 2420 ntBASIC17.07■□□□□ 0.32
SLC28A1O00337 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.07■□□□□ 0.32
SLC28A1O00337 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SLC28A1O00337 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
SLC28A1O00337 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SLC28A1O00337 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SLC28A1O00337 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SLC28A1O00337 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SLC28A1O00337 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms