Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC85CA6NKD9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 MTMR9LP-203ENST00000426597 1545 ntBASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 AC099548.2-209ENST00000480264 625 ntBASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 MPI-209ENST00000564003 1195 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC85CA6NKD9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 MIR1908-201ENST00000410394 80 ntBASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 LINC00982-205ENST00000420957 435 ntBASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 RNA5SP423-201ENST00000517127 109 ntBASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 SNX29P1-201ENST00000548357 1007 ntBASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 AC008494.3-201ENST00000606615 944 ntBASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC85CA6NKD9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 COX5BP2-201ENST00000392354 334 ntBASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 BRWD1P1-201ENST00000401091 371 ntBASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms