Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC005104.2-201ENST00000427818 678 ntBASIC18.53■□□□□ 0.56
USP3Q9Y6I4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 FGFR3P6-201ENST00000457012 610 ntBASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 AL160237.2-201ENST00000556165 472 ntBASIC18.53■□□□□ 0.56
USP3Q9Y6I4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 AC008608.2-201ENST00000606089 416 ntBASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP3Q9Y6I4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 MTDHP3-201ENST00000594186 672 ntBASIC18.52■□□□□ 0.56
USP3Q9Y6I4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP3Q9Y6I4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
USP3Q9Y6I4 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.52■□□□□ 0.55
USP3Q9Y6I4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP3Q9Y6I4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP3Q9Y6I4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.51■□□□□ 0.55
USP3Q9Y6I4 REXO1L11P-201ENST00000620964 1927 ntBASIC18.51■□□□□ 0.55
USP3Q9Y6I4 KRT8P10-201ENST00000450021 1447 ntBASIC18.5■□□□□ 0.55
USP3Q9Y6I4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 AP002469.2-201ENST00000531724 424 ntBASIC18.5■□□□□ 0.55
USP3Q9Y6I4 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
USP3Q9Y6I4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USP3Q9Y6I4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms