Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 AL590627.1-203ENST00000421194 1026 ntBASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 AC120114.3-201ENST00000611923 658 ntBASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 AL773604.1-201ENST00000617417 272 ntBASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 AC009102.3-201ENST00000623118 1491 ntBASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHGA3Q9Y5H0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 KRT18P67-201ENST00000432816 1264 ntBASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 FAM197Y8-203ENST00000450145 560 ntBASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 AC117500.6-201ENST00000624871 588 ntBASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDHGA3Q9Y5H0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDHGA3Q9Y5H0 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC096582.2-201ENST00000510860 516 ntBASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDHGA3Q9Y5H0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 ABALON-201ENST00000629058 1903 ntBASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 PMS2P1-201ENST00000431037 1228 ntBASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 AF186996.4-201ENST00000467186 377 ntBASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.25■□□□□ 0.35
PCDHGA3Q9Y5H0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms