Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 ATP5G1P1-201ENST00000448724 379 ntBASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 MIR3917-201ENST00000580971 93 ntBASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC39Q9UFE4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC39Q9UFE4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 AL096828.2-201ENST00000567259 1965 ntBASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC39Q9UFE4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC39Q9UFE4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC39Q9UFE4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms