Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CUEDC1Q9NWM3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AC233702.3-201ENST00000578656 1387 ntBASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.19■□□□□ 0.34
CUEDC1Q9NWM3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 SLC25A6P5-201ENST00000435663 894 ntBASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.18■□□□□ 0.34
CUEDC1Q9NWM3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AP000867.3-201ENST00000524675 377 ntBASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AC134043.2-201ENST00000624206 2238 ntBASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CUEDC1Q9NWM3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms