Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.22■□□□□ 0.51
TDP1Q9NUW8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.22■□□□□ 0.51
TDP1Q9NUW8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 AL138781.2-201ENST00000617896 1843 ntBASIC18.21■□□□□ 0.51
TDP1Q9NUW8 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 AL139424.1-201ENST00000607572 797 ntBASIC18.21■□□□□ 0.51
TDP1Q9NUW8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 NCF1C-201ENST00000438382 1427 ntBASIC18.21■□□□□ 0.51
TDP1Q9NUW8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
TDP1Q9NUW8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.21■□□□□ 0.5
TDP1Q9NUW8 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AC005104.2-201ENST00000427818 678 ntBASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AC108751.1-201ENST00000490852 363 ntBASIC18.2■□□□□ 0.5
TDP1Q9NUW8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.2■□□□□ 0.5
TDP1Q9NUW8 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 AP000997.3-201ENST00000623333 2250 ntBASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 UPF3AP3-201ENST00000420996 769 ntBASIC18.19■□□□□ 0.5
TDP1Q9NUW8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 IGHV3-52-201ENST00000519770 353 ntBASIC18.19■□□□□ 0.5
TDP1Q9NUW8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TDP1Q9NUW8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms