Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 AC004832.2-201ENST00000426397 482 ntBASIC20.85■□□□□ 0.93
DDX4Q9NQI0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 STK19B-204ENST00000512515 211 ntBASIC20.85■□□□□ 0.93
DDX4Q9NQI0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.85■□□□□ 0.93
DDX4Q9NQI0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 AC009336.1-201ENST00000608941 1553 ntBASIC20.84■□□□□ 0.93
DDX4Q9NQI0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.84■□□□□ 0.93
DDX4Q9NQI0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.83■□□□□ 0.93
DDX4Q9NQI0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 RPS15P9-201ENST00000494093 319 ntBASIC20.83■□□□□ 0.93
DDX4Q9NQI0 IGHV3-65-201ENST00000523210 341 ntBASIC20.83■□□□□ 0.93
DDX4Q9NQI0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
DDX4Q9NQI0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
DDX4Q9NQI0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 AC004790.2-201ENST00000623588 572 ntBASIC20.82■□□□□ 0.92
DDX4Q9NQI0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 KRT18P55-202ENST00000578578 1546 ntBASIC20.82■□□□□ 0.92
DDX4Q9NQI0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
DDX4Q9NQI0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
DDX4Q9NQI0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
DDX4Q9NQI0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms