Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AP001094.4-201ENST00000579008 2176 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 KRT89P-201ENST00000620027 1478 ntBASIC18.36■□□□□ 0.53
PCDH9Q9HC56 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
PCDH9Q9HC56 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 OR6D1P-202ENST00000641007 5290 ntBASIC18.35■□□□□ 0.53
PCDH9Q9HC56 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 KRT18P65-201ENST00000439811 1286 ntBASIC18.35■□□□□ 0.53
PCDH9Q9HC56 DDX43P3-201ENST00000441064 443 ntBASIC18.35■□□□□ 0.53
PCDH9Q9HC56 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 AC087388.1-201ENST00000571370 1112 ntBASIC18.35■□□□□ 0.53
PCDH9Q9HC56 LINC01451-201ENST00000623792 534 ntBASIC18.35■□□□□ 0.53
PCDH9Q9HC56 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDH9Q9HC56 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 REXO1L11P-201ENST00000620964 1927 ntBASIC18.34■□□□□ 0.53
PCDH9Q9HC56 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 KRT18P35-201ENST00000510488 1269 ntBASIC18.34■□□□□ 0.53
PCDH9Q9HC56 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 AL121956.5-201ENST00000625261 221 ntBASIC18.34■□□□□ 0.53
PCDH9Q9HC56 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDH9Q9HC56 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
PCDH9Q9HC56 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDH9Q9HC56 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDH9Q9HC56 AC012313.1-201ENST00000593393 3059 ntBASIC18.33■□□□□ 0.53
PCDH9Q9HC56 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
PCDH9Q9HC56 PCDHA12-202ENST00000613593 2588 ntBASIC18.33■□□□□ 0.52
PCDH9Q9HC56 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 AP003733.1-201ENST00000491725 852 ntBASIC18.33■□□□□ 0.52
PCDH9Q9HC56 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.33■□□□□ 0.52
PCDH9Q9HC56 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 KRT8P47-201ENST00000604727 1398 ntBASIC18.32■□□□□ 0.52
PCDH9Q9HC56 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms