Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 AC092338.2-201ENST00000568827 1415 ntBASIC15.52■□□□□ 0.08
NKX3-1Q99801 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 AC104390.1-201ENST00000555663 520 ntBASIC15.52■□□□□ 0.08
NKX3-1Q99801 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
NKX3-1Q99801 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
NKX3-1Q99801 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NKX3-1Q99801 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
NKX3-1Q99801 CROCCP1-201ENST00000426910 5675 ntBASIC15.52■□□□□ 0.07
NKX3-1Q99801 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.52■□□□□ 0.07
NKX3-1Q99801 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NKX3-1Q99801 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.52■□□□□ 0.07
NKX3-1Q99801 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NKX3-1Q99801 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
NKX3-1Q99801 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 AC007663.1-201ENST00000438948 1240 ntBASIC15.51■□□□□ 0.07
NKX3-1Q99801 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 WWOX-216ENST00000569818 525 ntBASIC15.51■□□□□ 0.07
NKX3-1Q99801 AC010240.3-201ENST00000607688 395 ntBASIC15.51■□□□□ 0.07
NKX3-1Q99801 AC024243.1-201ENST00000609234 778 ntBASIC15.51■□□□□ 0.07
NKX3-1Q99801 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.51■□□□□ 0.07
NKX3-1Q99801 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NKX3-1Q99801 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.51■□□□□ 0.07
NKX3-1Q99801 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 KRT18P21-201ENST00000515767 1272 ntBASIC15.5■□□□□ 0.07
NKX3-1Q99801 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NKX3-1Q99801 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NKX3-1Q99801 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms