Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUP88Q99567 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
NUP88Q99567 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUP88Q99567 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUP88Q99567 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
NUP88Q99567 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NUP88Q99567 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NUP88Q99567 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NUP88Q99567 AC093677.2-201ENST00000600169 1863 ntBASIC20.77■□□□□ 0.92
NUP88Q99567 AP005117.1-201ENST00000584346 1413 ntBASIC20.77■□□□□ 0.91
NUP88Q99567 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.77■□□□□ 0.91
NUP88Q99567 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NUP88Q99567 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NUP88Q99567 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
NUP88Q99567 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NUP88Q99567 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.77■□□□□ 0.91
NUP88Q99567 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NUP88Q99567 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
NUP88Q99567 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.76■□□□□ 0.91
NUP88Q99567 AC010460.3-201ENST00000511359 1579 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.76■□□□□ 0.91
NUP88Q99567 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 AC243591.1-201ENST00000452967 1364 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NUP88Q99567 HTR7P1-202ENST00000624664 4411 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.76■□□□□ 0.91
NUP88Q99567 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.76■□□□□ 0.91
NUP88Q99567 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.76■□□□□ 0.91
NUP88Q99567 SLC25A1P1-201ENST00000528351 927 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 SART3-203ENST00000546611 1184 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.76■□□□□ 0.91
NUP88Q99567 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NUP88Q99567 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.76■□□□□ 0.91
NUP88Q99567 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
NUP88Q99567 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.76■□□□□ 0.91
NUP88Q99567 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NUP88Q99567 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.76■□□□□ 0.91
NUP88Q99567 BICD1-207ENST00000551848 1962 ntBASIC20.76■□□□□ 0.91
NUP88Q99567 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
NUP88Q99567 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NUP88Q99567 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.75■□□□□ 0.91
NUP88Q99567 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.75■□□□□ 0.91
NUP88Q99567 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.75■□□□□ 0.91
NUP88Q99567 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 AC064862.7-201ENST00000604520 867 ntBASIC20.75■□□□□ 0.91
NUP88Q99567 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.75■□□□□ 0.91
NUP88Q99567 MIR7706-201ENST00000613747 67 ntBASIC20.75■□□□□ 0.91
NUP88Q99567 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.75■□□□□ 0.91
NUP88Q99567 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.75■□□□□ 0.91
NUP88Q99567 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 IL9RP2-201ENST00000423948 1312 ntBASIC20.75■□□□□ 0.91
NUP88Q99567 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.75■□□□□ 0.91
NUP88Q99567 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NUP88Q99567 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.74■□□□□ 0.91
NUP88Q99567 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.74■□□□□ 0.91
NUP88Q99567 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NUP88Q99567 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NUP88Q99567 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NUP88Q99567 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.74■□□□□ 0.91
NUP88Q99567 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.74■□□□□ 0.91
NUP88Q99567 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.74■□□□□ 0.91
NUP88Q99567 BX640515.1-201ENST00000617215 977 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms