Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 AL512343.1-201ENST00000605837 169 ntBASIC17.82■□□□□ 0.44
TTC28Q96AY4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 AP000842.3-202ENST00000569238 1080 ntBASIC17.81■□□□□ 0.44
TTC28Q96AY4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 AC009102.3-201ENST00000623118 1491 ntBASIC17.81■□□□□ 0.44
TTC28Q96AY4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 AC009407.1-201ENST00000568958 598 ntBASIC17.81■□□□□ 0.44
TTC28Q96AY4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TTC28Q96AY4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.81■□□□□ 0.44
TTC28Q96AY4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC103564.2-201ENST00000432853 1299 ntBASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 AC099548.2-209ENST00000480264 625 ntBASIC17.8■□□□□ 0.44
TTC28Q96AY4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 RARRES2P8-201ENST00000566335 367 ntBASIC17.8■□□□□ 0.44
TTC28Q96AY4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.8■□□□□ 0.44
TTC28Q96AY4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TTC28Q96AY4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 AC018445.3-201ENST00000624177 1945 ntBASIC17.79■□□□□ 0.44
TTC28Q96AY4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 TTTY23B-201ENST00000442790 549 ntBASIC17.79■□□□□ 0.44
TTC28Q96AY4 RN7SL837P-201ENST00000463010 287 ntBASIC17.79■□□□□ 0.44
TTC28Q96AY4 MIR4453-201ENST00000584019 89 ntBASIC17.79■□□□□ 0.44
TTC28Q96AY4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms