Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 MTDHP5-201ENST00000598980 586 ntBASIC17.76■□□□□ 0.43
HMGB4Q8WW32 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 AL589182.2-201ENST00000619332 1049 ntBASIC17.76■□□□□ 0.43
HMGB4Q8WW32 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB4Q8WW32 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HMGB4Q8WW32 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 ELK2BP-201ENST00000415014 1224 ntBASIC17.74■□□□□ 0.43
HMGB4Q8WW32 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGB4Q8WW32 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 KRT18P2-201ENST00000447938 1258 ntBASIC17.73■□□□□ 0.43
HMGB4Q8WW32 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 DUTP2-201ENST00000519164 463 ntBASIC17.73■□□□□ 0.43
HMGB4Q8WW32 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HMGB4Q8WW32 MIR4751-201ENST00000578027 74 ntBASIC17.73■□□□□ 0.43
HMGB4Q8WW32 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms