Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 REXO1L11P-201ENST00000620964 1927 ntBASIC18.2■□□□□ 0.5
RTL3Q8N8U3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 AC122714.2-201ENST00000502787 707 ntBASIC18.2■□□□□ 0.5
RTL3Q8N8U3 KRT18P56-201ENST00000507275 550 ntBASIC18.2■□□□□ 0.5
RTL3Q8N8U3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RTL3Q8N8U3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 AC138894.3-201ENST00000603787 634 ntBASIC18.19■□□□□ 0.5
RTL3Q8N8U3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RTL3Q8N8U3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 INTS4P1-201ENST00000438455 1935 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 RCN1P2-201ENST00000398357 915 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 NUS1P2-201ENST00000417358 873 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 AC005104.2-201ENST00000427818 678 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 CLEC4GP1-201ENST00000596555 870 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 LINC00304-203ENST00000565008 1864 ntBASIC18.18■□□□□ 0.5
RTL3Q8N8U3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RTL3Q8N8U3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RTL3Q8N8U3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms