Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USP41Q3LFD5 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP41Q3LFD5 SIRPAP1-201ENST00000448467 1770 ntBASIC18.83■□□□□ 0.61
USP41Q3LFD5 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.83■□□□□ 0.61
USP41Q3LFD5 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP41Q3LFD5 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.83■□□□□ 0.61
USP41Q3LFD5 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.83■□□□□ 0.61
USP41Q3LFD5 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.83■□□□□ 0.61
USP41Q3LFD5 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP41Q3LFD5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.83■□□□□ 0.61
USP41Q3LFD5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 KRT18P3-201ENST00000451602 1288 ntBASIC18.83■□□□□ 0.6
USP41Q3LFD5 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.83■□□□□ 0.6
USP41Q3LFD5 PGM5P2-202ENST00000637225 1043 ntBASIC18.83■□□□□ 0.6
USP41Q3LFD5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP41Q3LFD5 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP41Q3LFD5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AL020989.1-201ENST00000422979 469 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 KRT18P27-201ENST00000427733 1299 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AC116407.2-201ENST00000613639 860 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AL353593.2-201ENST00000602529 1483 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AC093677.2-201ENST00000600169 1863 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP41Q3LFD5 AC007613.1-201ENST00000572811 2597 ntBASIC18.82■□□□□ 0.6
USP41Q3LFD5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 WIZP1-201ENST00000531444 2299 ntBASIC18.81■□□□□ 0.6
USP41Q3LFD5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AL589182.2-201ENST00000619332 1049 ntBASIC18.81■□□□□ 0.6
USP41Q3LFD5 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AC005593.1-201ENST00000624894 515 ntBASIC18.81■□□□□ 0.6
USP41Q3LFD5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms