Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A4P53420 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A4P53420 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL4A4P53420 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A4P53420 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.85■□□□□ 0.61
COL4A4P53420 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL4A4P53420 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.85■□□□□ 0.61
COL4A4P53420 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 AL589182.2-201ENST00000619332 1049 ntBASIC18.85■□□□□ 0.61
COL4A4P53420 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A4P53420 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
COL4A4P53420 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 AC135050.7-201ENST00000624508 2218 ntBASIC18.85■□□□□ 0.61
COL4A4P53420 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A4P53420 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A4P53420 AC023141.5-201ENST00000458585 616 ntBASIC18.85■□□□□ 0.61
COL4A4P53420 AC109322.1-201ENST00000524499 1264 ntBASIC18.85■□□□□ 0.61
COL4A4P53420 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A4P53420 AC068137.2-201ENST00000605408 478 ntBASIC18.85■□□□□ 0.61
COL4A4P53420 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A4P53420 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A4P53420 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A4P53420 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A4P53420 AC104581.1-202ENST00000635932 2618 ntBASIC18.84■□□□□ 0.61
COL4A4P53420 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A4P53420 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.84■□□□□ 0.61
COL4A4P53420 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A4P53420 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL4A4P53420 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A4P53420 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A4P53420 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A4P53420 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
COL4A4P53420 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.83■□□□□ 0.61
COL4A4P53420 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.83■□□□□ 0.61
COL4A4P53420 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.83■□□□□ 0.61
COL4A4P53420 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.83■□□□□ 0.61
COL4A4P53420 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.83■□□□□ 0.61
COL4A4P53420 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.83■□□□□ 0.61
COL4A4P53420 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.83■□□□□ 0.61
COL4A4P53420 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 AC073592.5-201ENST00000624854 528 ntBASIC18.83■□□□□ 0.61
COL4A4P53420 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.83■□□□□ 0.61
COL4A4P53420 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.83■□□□□ 0.61
COL4A4P53420 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.83■□□□□ 0.61
COL4A4P53420 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A4P53420 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.83■□□□□ 0.6
COL4A4P53420 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A4P53420 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.83■□□□□ 0.6
COL4A4P53420 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 AC244107.1-201ENST00000442033 332 ntBASIC18.82■□□□□ 0.6
COL4A4P53420 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.82■□□□□ 0.6
COL4A4P53420 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.82■□□□□ 0.6
COL4A4P53420 AJ011932.1-201ENST00000621707 465 ntBASIC18.82■□□□□ 0.6
COL4A4P53420 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms