Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.7■□□□□ 0.58
LIG3P49916 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 AL356309.3-201ENST00000624132 1934 ntBASIC18.7■□□□□ 0.58
LIG3P49916 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.7■□□□□ 0.58
LIG3P49916 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIG3P49916 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.69■□□□□ 0.58
LIG3P49916 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.69■□□□□ 0.58
LIG3P49916 AL359075.1-203ENST00000462729 1002 ntBASIC18.69■□□□□ 0.58
LIG3P49916 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 AC024243.1-201ENST00000609234 778 ntBASIC18.69■□□□□ 0.58
LIG3P49916 AC068587.9-201ENST00000641814 219 ntBASIC18.69■□□□□ 0.58
LIG3P49916 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.69■□□□□ 0.58
LIG3P49916 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIG3P49916 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIG3P49916 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.69■□□□□ 0.58
LIG3P49916 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.68■□□□□ 0.58
LIG3P49916 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LIG3P49916 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.68■□□□□ 0.58
LIG3P49916 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.68■□□□□ 0.58
LIG3P49916 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.68■□□□□ 0.58
LIG3P49916 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.68■□□□□ 0.58
LIG3P49916 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.68■□□□□ 0.58
LIG3P49916 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
LIG3P49916 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIG3P49916 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIG3P49916 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
LIG3P49916 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.67■□□□□ 0.58
LIG3P49916 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.67■□□□□ 0.58
LIG3P49916 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms