Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
SSR1P43307 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.92■□□□□ 0.62
SSR1P43307 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 KRT18P55-202ENST00000578578 1546 ntBASIC18.92■□□□□ 0.62
SSR1P43307 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.92■□□□□ 0.62
SSR1P43307 AL137013.1-201ENST00000432946 1228 ntBASIC18.92■□□□□ 0.62
SSR1P43307 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SSR1P43307 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SSR1P43307 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SSR1P43307 AC005363.2-201ENST00000618631 242 ntBASIC18.92■□□□□ 0.62
SSR1P43307 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.92■□□□□ 0.62
SSR1P43307 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSR1P43307 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SSR1P43307 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.92■□□□□ 0.62
SSR1P43307 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.92■□□□□ 0.62
SSR1P43307 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.91■□□□□ 0.62
SSR1P43307 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSR1P43307 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 COX11P1-201ENST00000489116 835 ntBASIC18.91■□□□□ 0.62
SSR1P43307 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.91■□□□□ 0.62
SSR1P43307 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 AC073912.3-201ENST00000624414 853 ntBASIC18.91■□□□□ 0.62
SSR1P43307 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.91■□□□□ 0.62
SSR1P43307 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.91■□□□□ 0.62
SSR1P43307 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSR1P43307 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.91■□□□□ 0.62
SSR1P43307 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSR1P43307 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.9■□□□□ 0.62
SSR1P43307 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.9■□□□□ 0.62
SSR1P43307 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.9■□□□□ 0.62
SSR1P43307 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SSR1P43307 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.9■□□□□ 0.62
SSR1P43307 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
SSR1P43307 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 AC100803.2-201ENST00000562459 1963 ntBASIC18.9■□□□□ 0.62
SSR1P43307 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
SSR1P43307 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSR1P43307 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSR1P43307 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
SSR1P43307 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSR1P43307 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.89■□□□□ 0.61
SSR1P43307 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSR1P43307 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSR1P43307 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms