Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
HNF4AP41235 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.26■□□□□ 0.35
HNF4AP41235 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 AL353692.3-201ENST00000407031 1396 ntBASIC17.26■□□□□ 0.35
HNF4AP41235 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HNF4AP41235 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HNF4AP41235 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HNF4AP41235 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HNF4AP41235 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.25■□□□□ 0.35
HNF4AP41235 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.25■□□□□ 0.35
HNF4AP41235 AC005332.1-201ENST00000577698 1310 ntBASIC17.25■□□□□ 0.35
HNF4AP41235 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HNF4AP41235 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HNF4AP41235 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.25■□□□□ 0.35
HNF4AP41235 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.25■□□□□ 0.35
HNF4AP41235 FAM86EP-206ENST00000510506 987 ntBASIC17.25■□□□□ 0.35
HNF4AP41235 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.25■□□□□ 0.35
HNF4AP41235 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.25■□□□□ 0.35
HNF4AP41235 AL136038.3-201ENST00000561909 1096 ntBASIC17.25■□□□□ 0.35
HNF4AP41235 AL121956.5-201ENST00000625261 221 ntBASIC17.25■□□□□ 0.35
HNF4AP41235 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.25■□□□□ 0.35
HNF4AP41235 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HNF4AP41235 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.25■□□□□ 0.35
HNF4AP41235 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
HNF4AP41235 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HNF4AP41235 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
HNF4AP41235 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.24■□□□□ 0.35
HNF4AP41235 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.24■□□□□ 0.35
HNF4AP41235 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HNF4AP41235 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.24■□□□□ 0.35
HNF4AP41235 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.24■□□□□ 0.35
HNF4AP41235 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 DDX43P3-201ENST00000441064 443 ntBASIC17.24■□□□□ 0.35
HNF4AP41235 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.24■□□□□ 0.35
HNF4AP41235 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.24■□□□□ 0.35
HNF4AP41235 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HNF4AP41235 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.24■□□□□ 0.35
HNF4AP41235 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HNF4AP41235 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HNF4AP41235 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.23■□□□□ 0.35
HNF4AP41235 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.23■□□□□ 0.35
HNF4AP41235 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
HNF4AP41235 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 PCED1CP-201ENST00000419887 785 ntBASIC17.23■□□□□ 0.35
HNF4AP41235 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.23■□□□□ 0.35
HNF4AP41235 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.23■□□□□ 0.35
HNF4AP41235 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.23■□□□□ 0.35
HNF4AP41235 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms