Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 GUSBP12-201ENST00000513727 720 ntBASIC16.73■□□□□ 0.27
SOX3P41225 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.73■□□□□ 0.27
SOX3P41225 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.73■□□□□ 0.27
SOX3P41225 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX3P41225 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
SOX3P41225 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SOX3P41225 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX3P41225 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 DRAXINP1-201ENST00000437611 948 ntBASIC16.72■□□□□ 0.27
SOX3P41225 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX3P41225 TPSP2-201ENST00000561760 610 ntBASIC16.72■□□□□ 0.27
SOX3P41225 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX3P41225 CLEC4GP1-201ENST00000596555 870 ntBASIC16.72■□□□□ 0.27
SOX3P41225 AL592071.1-201ENST00000611956 408 ntBASIC16.72■□□□□ 0.27
SOX3P41225 AC124864.1-201ENST00000623408 392 ntBASIC16.72■□□□□ 0.27
SOX3P41225 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX3P41225 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX3P41225 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX3P41225 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 AC012317.2-201ENST00000623305 2251 ntBASIC16.71■□□□□ 0.27
SOX3P41225 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX3P41225 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 LINC00265-3P-201ENST00000447588 903 ntBASIC16.71■□□□□ 0.27
SOX3P41225 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.71■□□□□ 0.27
SOX3P41225 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX3P41225 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.71■□□□□ 0.27
SOX3P41225 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX3P41225 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SOX3P41225 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.71■□□□□ 0.27
SOX3P41225 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms