Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCANP13611 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCANP13611 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.22■□□□□ 0.51
VCANP13611 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.22■□□□□ 0.51
VCANP13611 KRT18P41-201ENST00000518924 1277 ntBASIC18.22■□□□□ 0.51
VCANP13611 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.22■□□□□ 0.51
VCANP13611 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCANP13611 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCANP13611 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.22■□□□□ 0.51
VCANP13611 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.22■□□□□ 0.51
VCANP13611 AL049757.1-201ENST00000616842 1596 ntBASIC18.21■□□□□ 0.51
VCANP13611 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VCANP13611 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.21■□□□□ 0.51
VCANP13611 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.21■□□□□ 0.51
VCANP13611 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.21■□□□□ 0.51
VCANP13611 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.21■□□□□ 0.51
VCANP13611 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.21■□□□□ 0.51
VCANP13611 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.21■□□□□ 0.51
VCANP13611 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.21■□□□□ 0.51
VCANP13611 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
VCANP13611 SIRPAP1-201ENST00000448467 1770 ntBASIC18.21■□□□□ 0.51
VCANP13611 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCANP13611 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.21■□□□□ 0.51
VCANP13611 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VCANP13611 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.21■□□□□ 0.5
VCANP13611 AC022144.1-201ENST00000602255 1580 ntBASIC18.21■□□□□ 0.5
VCANP13611 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VCANP13611 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.21■□□□□ 0.5
VCANP13611 MYCLP1-201ENST00000372451 1075 ntBASIC18.21■□□□□ 0.5
VCANP13611 AC112492.5-201ENST00000421897 457 ntBASIC18.21■□□□□ 0.5
VCANP13611 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.21■□□□□ 0.5
VCANP13611 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.2■□□□□ 0.5
VCANP13611 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.2■□□□□ 0.5
VCANP13611 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
VCANP13611 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
VCANP13611 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
VCANP13611 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VCANP13611 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.2■□□□□ 0.5
VCANP13611 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.2■□□□□ 0.5
VCANP13611 AC112698.1-201ENST00000510299 916 ntBASIC18.2■□□□□ 0.5
VCANP13611 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCANP13611 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
VCANP13611 KRT8P44-201ENST00000441609 1350 ntBASIC18.19■□□□□ 0.5
VCANP13611 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 SPDYE14P-201ENST00000442619 822 ntBASIC18.19■□□□□ 0.5
VCANP13611 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.19■□□□□ 0.5
VCANP13611 TP53TG3HP-202ENST00000569755 579 ntBASIC18.19■□□□□ 0.5
VCANP13611 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.19■□□□□ 0.5
VCANP13611 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.19■□□□□ 0.5
VCANP13611 FP475955.4-201ENST00000623131 1990 ntBASIC18.19■□□□□ 0.5
VCANP13611 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.19■□□□□ 0.5
VCANP13611 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VCANP13611 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.19■□□□□ 0.5
VCANP13611 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.19■□□□□ 0.5
VCANP13611 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VCANP13611 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
VCANP13611 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms