Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DPB1P04440 AC007663.1-201ENST00000438948 1240 ntBASIC16■□□□□ 0.15
HLA-DPB1P04440 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DPB1P04440 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HLA-DPB1P04440 MIR4674-201ENST00000582457 87 ntBASIC16■□□□□ 0.15
HLA-DPB1P04440 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DPB1P04440 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16■□□□□ 0.15
HLA-DPB1P04440 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
HLA-DPB1P04440 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DPB1P04440 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16■□□□□ 0.15
HLA-DPB1P04440 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16■□□□□ 0.15
HLA-DPB1P04440 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DPB1P04440 AC092338.2-201ENST00000568827 1415 ntBASIC16■□□□□ 0.15
HLA-DPB1P04440 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16■□□□□ 0.15
HLA-DPB1P04440 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
HLA-DPB1P04440 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DPB1P04440 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HLA-DPB1P04440 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DPB1P04440 LINC01568-207ENST00000641790 1380 ntBASIC16■□□□□ 0.15
HLA-DPB1P04440 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 MCCD1P1-208ENST00000445732 328 ntBASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ECEL1P2-202ENST00000465689 757 ntBASIC15.99■□□□□ 0.15
HLA-DPB1P04440 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 EGLN1P1-201ENST00000531623 762 ntBASIC15.99■□□□□ 0.15
HLA-DPB1P04440 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 AC073912.3-201ENST00000624414 853 ntBASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DPB1P04440 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 AC128688.1-201ENST00000487626 519 ntBASIC15.98■□□□□ 0.15
HLA-DPB1P04440 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 AC133561.5-201ENST00000635547 218 ntBASIC15.98■□□□□ 0.15
HLA-DPB1P04440 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HLA-DPB1P04440 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms