Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL4A1P02462 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.55■■□□□ 1.04
COL4A1P02462 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL4A1P02462 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 LBH-203ENST00000404397 543 ntTSL 4 BASIC21.55■■□□□ 1.04
COL4A1P02462 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 LINC00982-205ENST00000420957 435 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 ADH5P3-201ENST00000433842 1137 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 SIGLEC30P-201ENST00000455569 941 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 AL031432.2-201ENST00000566714 459 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 AL928711.1-201ENST00000570165 459 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 MIR3687-2-201ENST00000577708 61 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC21.55■■□□□ 1.04
COL4A1P02462 MIR3687-1-201ENST00000614492 61 ntBASIC21.55■■□□□ 1.04
COL4A1P02462 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
COL4A1P02462 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
COL4A1P02462 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL4A1P02462 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
COL4A1P02462 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.55■■□□□ 1.04
COL4A1P02462 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.54■■□□□ 1.04
COL4A1P02462 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 KRT19P2-202ENST00000557173 1012 ntBASIC21.54■■□□□ 1.04
COL4A1P02462 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC21.54■■□□□ 1.04
COL4A1P02462 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
COL4A1P02462 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
COL4A1P02462 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
COL4A1P02462 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.54■■□□□ 1.04
COL4A1P02462 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.54■■□□□ 1.04
COL4A1P02462 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.54■■□□□ 1.04
COL4A1P02462 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
COL4A1P02462 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.54■■□□□ 1.04
COL4A1P02462 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL4A1P02462 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 MRPL20P1-201ENST00000400819 433 ntBASIC21.53■■□□□ 1.04
COL4A1P02462 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.53■■□□□ 1.04
COL4A1P02462 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.53■■□□□ 1.04
COL4A1P02462 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.53■■□□□ 1.04
COL4A1P02462 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL4A1P02462 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.53■■□□□ 1.04
COL4A1P02462 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.53■■□□□ 1.04
COL4A1P02462 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.53■■□□□ 1.04
COL4A1P02462 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
COL4A1P02462 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
COL4A1P02462 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL4A1P02462 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
COL4A1P02462 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.52■■□□□ 1.04
COL4A1P02462 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COL4A1P02462 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.52■■□□□ 1.04
COL4A1P02462 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms