Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SEMA3DO95025 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SEMA3DO95025 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SEMA3DO95025 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.04■□□□□ 0.32
SEMA3DO95025 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 AL136038.3-201ENST00000561909 1096 ntBASIC17.04■□□□□ 0.32
SEMA3DO95025 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.04■□□□□ 0.32
SEMA3DO95025 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.04■□□□□ 0.32
SEMA3DO95025 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.04■□□□□ 0.32
SEMA3DO95025 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SEMA3DO95025 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SEMA3DO95025 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.04■□□□□ 0.32
SEMA3DO95025 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SEMA3DO95025 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
SEMA3DO95025 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 AC009053.2-201ENST00000563701 2365 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SEMA3DO95025 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.03■□□□□ 0.32
SEMA3DO95025 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SEMA3DO95025 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SEMA3DO95025 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.03■□□□□ 0.32
SEMA3DO95025 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.03■□□□□ 0.32
SEMA3DO95025 FAM210CP-201ENST00000445714 574 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 MTCL1P1-201ENST00000446207 792 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 AC068472.1-201ENST00000474589 881 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 KRT18P21-201ENST00000515767 1272 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.03■□□□□ 0.32
SEMA3DO95025 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.03■□□□□ 0.32
SEMA3DO95025 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
SEMA3DO95025 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.03■□□□□ 0.32
SEMA3DO95025 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.03■□□□□ 0.32
SEMA3DO95025 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SEMA3DO95025 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.03■□□□□ 0.32
SEMA3DO95025 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SEMA3DO95025 TNRC18P3-201ENST00000441896 2691 ntBASIC17.03■□□□□ 0.32
SEMA3DO95025 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SEMA3DO95025 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.02■□□□□ 0.32
SEMA3DO95025 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 AL121956.5-201ENST00000625261 221 ntBASIC17.02■□□□□ 0.32
SEMA3DO95025 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SEMA3DO95025 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SEMA3DO95025 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.02■□□□□ 0.32
SEMA3DO95025 AC009949.1-201ENST00000623048 1830 ntBASIC17.02■□□□□ 0.31
SEMA3DO95025 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SEMA3DO95025 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SEMA3DO95025 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SEMA3DO95025 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SEMA3DO95025 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SEMA3DO95025 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms