Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CLDN3O15551 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.42■□□□□ 0.7
CLDN3O15551 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLDN3O15551 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 AC009949.1-201ENST00000623048 1830 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 AC010460.3-201ENST00000511359 1579 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 UNC93B7-201ENST00000509439 705 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.41■□□□□ 0.7
CLDN3O15551 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.41■□□□□ 0.7
CLDN3O15551 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLDN3O15551 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.41■□□□□ 0.7
CLDN3O15551 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
CLDN3O15551 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
CLDN3O15551 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLDN3O15551 INTS4P1-201ENST00000438455 1935 ntBASIC19.41■□□□□ 0.7
CLDN3O15551 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.41■□□□□ 0.7
CLDN3O15551 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLDN3O15551 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.4■□□□□ 0.7
CLDN3O15551 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
CLDN3O15551 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN3O15551 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.4■□□□□ 0.7
CLDN3O15551 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.4■□□□□ 0.7
CLDN3O15551 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.4■□□□□ 0.7
CLDN3O15551 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.4■□□□□ 0.7
CLDN3O15551 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.4■□□□□ 0.7
CLDN3O15551 IFNL4P1-201ENST00000607083 540 ntBASIC19.4■□□□□ 0.7
CLDN3O15551 AL691432.3-201ENST00000621860 400 ntBASIC19.4■□□□□ 0.7
CLDN3O15551 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CLDN3O15551 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CLDN3O15551 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CLDN3O15551 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.4■□□□□ 0.7
CLDN3O15551 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.4■□□□□ 0.7
CLDN3O15551 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN3O15551 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.4■□□□□ 0.7
CLDN3O15551 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLDN3O15551 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLDN3O15551 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLDN3O15551 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLDN3O15551 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLDN3O15551 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN3O15551 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN3O15551 FAM220CP-201ENST00000395253 831 ntBASIC19.39■□□□□ 0.69
CLDN3O15551 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.39■□□□□ 0.69
CLDN3O15551 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.39■□□□□ 0.69
CLDN3O15551 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.39■□□□□ 0.69
CLDN3O15551 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CLDN3O15551 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.39■□□□□ 0.69
CLDN3O15551 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.39■□□□□ 0.69
CLDN3O15551 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLDN3O15551 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms