Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AL023806.1-201ENST00000603994 1649 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SLC25A3P1-201ENST00000443844 931 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AC024563.2-201ENST00000603282 481 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AC145285.6-201ENST00000604632 637 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AL138966.2-201ENST00000621997 464 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 LIN28AP1-201ENST00000429574 405 ntBASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 RASA4DP-201ENST00000460726 1199 ntBASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC113404.2-201ENST00000507884 177 ntBASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC140113.3-201ENST00000605663 199 ntBASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CPSF4LA6NMK7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 ATP5G1P1-201ENST00000448724 379 ntBASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC010203.1-204ENST00000548782 407 ntBASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC116407.2-201ENST00000613639 860 ntBASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC079602.3-201ENST00000623931 403 ntBASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CPSF4LA6NMK7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms