Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PGM5P2-202ENST00000637225 1043 ntBASIC18.52■□□□□ 0.56
LIMD1Q9UGP4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LIMD1Q9UGP4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LIMD1Q9UGP4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.52■□□□□ 0.56
LIMD1Q9UGP4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMD1Q9UGP4 AC079776.2-201ENST00000641154 1609 ntBASIC18.52■□□□□ 0.55
LIMD1Q9UGP4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LIMD1Q9UGP4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LIMD1Q9UGP4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LIMD1Q9UGP4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIMD1Q9UGP4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 KRT18P27-201ENST00000427733 1299 ntBASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 AC006557.2-201ENST00000592985 1240 ntBASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIMD1Q9UGP4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC073621.1-201ENST00000392730 636 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 HTR5BP-201ENST00000430851 1154 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 YBX1P5-201ENST00000509441 847 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC092364.2-202ENST00000597012 1073 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AC092865.6-201ENST00000642101 219 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIMD1Q9UGP4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms