Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 AL121761.2-201ENST00000598007 1648 ntBASIC19.21■□□□□ 0.67
CCDC42Q96M95 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC42Q96M95 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC42Q96M95 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 AC011676.5-201ENST00000624864 2660 ntBASIC19.2■□□□□ 0.66
CCDC42Q96M95 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 PVRIG2P-201ENST00000435460 978 ntBASIC19.2■□□□□ 0.66
CCDC42Q96M95 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCDC42Q96M95 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC42Q96M95 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 REXO1L11P-201ENST00000620964 1927 ntBASIC19.19■□□□□ 0.66
CCDC42Q96M95 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 NEK4P2-201ENST00000580004 1012 ntBASIC19.19■□□□□ 0.66
CCDC42Q96M95 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 KRT17P2-201ENST00000300992 1314 ntBASIC19.19■□□□□ 0.66
CCDC42Q96M95 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC42Q96M95 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC42Q96M95 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms