Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LTB4R2-202ENST00000528054 3092 ntBASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 AC113404.2-201ENST00000507884 177 ntBASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 AC233702.3-201ENST00000578656 1387 ntBASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CHMP4CQ96CF2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHMP4CQ96CF2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHMP4CQ96CF2 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
CHMP4CQ96CF2 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CHMP4CQ96CF2 KRT89P-201ENST00000620027 1478 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 AP000997.3-201ENST00000623333 2250 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 AL845331.1-201ENST00000424978 1190 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 DRAXINP1-201ENST00000437611 948 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 GUSBP12-201ENST00000513727 720 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 AC090616.6-201ENST00000582640 721 ntBASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP4CQ96CF2 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 AL133373.2-201ENST00000623187 2828 ntBASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 AC099336.1-202ENST00000602961 463 ntBASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP4CQ96CF2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.18■□□□□ 0.98
CHMP4CQ96CF2 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms