Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 AC079602.3-201ENST00000623931 403 ntBASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLHC1Q8NHS4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC034232.1-201ENST00000506026 1064 ntBASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLHC1Q8NHS4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
CLHC1Q8NHS4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 RASA4DP-201ENST00000460726 1199 ntBASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 AL441883.1-201ENST00000566170 1045 ntBASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 AC024563.2-201ENST00000603282 481 ntBASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 AC140113.3-201ENST00000605663 199 ntBASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CLHC1Q8NHS4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLHC1Q8NHS4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLHC1Q8NHS4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms