Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 LINC01568-207ENST00000641790 1380 ntBASIC18.48■□□□□ 0.55
CCDC89Q8N998 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 ECEL1P3-201ENST00000427961 737 ntBASIC18.48■□□□□ 0.55
CCDC89Q8N998 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC89Q8N998 LINC00167-201ENST00000530583 1419 ntBASIC18.48■□□□□ 0.55
CCDC89Q8N998 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC89Q8N998 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 AD000864.1-201ENST00000624076 2295 ntBASIC18.47■□□□□ 0.55
CCDC89Q8N998 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 AC116407.2-201ENST00000613639 860 ntBASIC18.47■□□□□ 0.55
CCDC89Q8N998 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 LINC00304-203ENST00000565008 1864 ntBASIC18.47■□□□□ 0.55
CCDC89Q8N998 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC89Q8N998 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC89Q8N998 AC106820.2-201ENST00000563775 3264 ntBASIC18.47■□□□□ 0.55
CCDC89Q8N998 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 KRT18P22-201ENST00000402024 1347 ntBASIC18.46■□□□□ 0.55
CCDC89Q8N998 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC89Q8N998 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCDC89Q8N998 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC89Q8N998 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC89Q8N998 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
CCDC89Q8N998 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
CCDC89Q8N998 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.54
CCDC89Q8N998 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC89Q8N998 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CCDC89Q8N998 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
CCDC89Q8N998 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 HLA-J-201ENST00000462773 1622 ntBASIC18.45■□□□□ 0.54
CCDC89Q8N998 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
CCDC89Q8N998 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CCDC89Q8N998 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.45■□□□□ 0.54
CCDC89Q8N998 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC89Q8N998 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms