Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATL3Q6DD88 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ATL3Q6DD88 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 LINC01311-201ENST00000565162 1445 ntBASIC20.29■□□□□ 0.84
ATL3Q6DD88 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 LYSMD4-203ENST00000378904 2122 ntBASIC20.29■□□□□ 0.84
ATL3Q6DD88 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.29■□□□□ 0.84
ATL3Q6DD88 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATL3Q6DD88 AC097374.2-201ENST00000618617 1306 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 AC022211.2-201ENST00000585075 2527 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 SPDYE15P-201ENST00000424157 909 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 BX664615.1-201ENST00000443558 458 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 MTCL1P1-201ENST00000446207 792 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 AC010203.1-204ENST00000548782 407 ntBASIC20.28■□□□□ 0.84
ATL3Q6DD88 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATL3Q6DD88 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.28■□□□□ 0.84
ATL3Q6DD88 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.27■□□□□ 0.84
ATL3Q6DD88 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.27■□□□□ 0.84
ATL3Q6DD88 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.27■□□□□ 0.84
ATL3Q6DD88 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 AL353692.3-201ENST00000407031 1396 ntBASIC20.27■□□□□ 0.84
ATL3Q6DD88 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 ATP5G1P1-201ENST00000448724 379 ntBASIC20.27■□□□□ 0.84
ATL3Q6DD88 AC068472.1-201ENST00000474589 881 ntBASIC20.27■□□□□ 0.84
ATL3Q6DD88 AP003733.1-201ENST00000491725 852 ntBASIC20.27■□□□□ 0.84
ATL3Q6DD88 AC011558.1-201ENST00000623459 338 ntBASIC20.27■□□□□ 0.84
ATL3Q6DD88 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ATL3Q6DD88 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATL3Q6DD88 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
ATL3Q6DD88 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.27■□□□□ 0.83
ATL3Q6DD88 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.27■□□□□ 0.83
ATL3Q6DD88 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATL3Q6DD88 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATL3Q6DD88 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATL3Q6DD88 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATL3Q6DD88 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 GPR32P1-201ENST00000601788 811 ntBASIC20.26■□□□□ 0.83
ATL3Q6DD88 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
ATL3Q6DD88 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms