Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 AC003669.1-201ENST00000334569 611 ntBASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 AC004461.1-201ENST00000412461 403 ntBASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 PAWRP1-201ENST00000451083 565 ntBASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
VPS13DQ5THJ4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 AP000344.2-201ENST00000512987 629 ntBASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC11.84□□□□□ -0.51
VPS13DQ5THJ4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 SLC25A6P2-201ENST00000497974 877 ntBASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 MIR4745-201ENST00000577608 62 ntBASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
VPS13DQ5THJ4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC074386.1-202ENST00000463561 864 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 DUX4L27-201ENST00000554796 1261 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 GPS2P2-201ENST00000430745 888 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 SIGLEC30P-201ENST00000455569 941 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC011467.4-201ENST00000594891 528 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC023141.13-201ENST00000604991 943 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 REXO1L11P-201ENST00000620964 1927 ntBASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
VPS13DQ5THJ4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms