Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC144BQ3MJ40 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AL590627.1-203ENST00000421194 1026 ntBASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AC093677.2-201ENST00000600169 1863 ntBASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC144BQ3MJ40 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 MIR5100-201ENST00000579544 119 ntBASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 AL671883.3-201ENST00000603274 991 ntBASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC144BQ3MJ40 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 AL645608.8-201ENST00000606034 2086 ntBASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 RNA5SP419-201ENST00000515908 135 ntBASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 AC064862.7-201ENST00000604520 867 ntBASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 AL591684.3-201ENST00000605187 298 ntBASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 AC006538.3-201ENST00000612495 578 ntBASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC144BQ3MJ40 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms